APBC 2018
The Sixteenth Asia Pacific Bioinformatics Conference

Yokohama, Japan, 15-17 January 2018

The List of Accepted Posters

  • [A1] Constrained Maximum Entropy Models Selecting Genotype Interactions for Interval Censored Disease Occurrence, Qing Pan and Aotian Yang
  • [A2] Metabolite-content-guided prediction of edible/medicinal properties in plant bioprospecting, Liu Kang, Morita Aki, Kanaya Shigehiko and Altaf-Ul-Amin Md.
  • [A3] Extraction of genotype- phenotype relationships for a specific disease domain using the text mining technique, Kiyong Kim, Jae Moon Shin, Eunsung Park, Jeehee Yoon and Keonbae Lee
  • [A4] Prediction of GTP binding sites in Rab proteins based on two- dimensional convolutional neural networks and position specific scoring matrices profiles, Nguyen Quoc Khanh Le, Quang Thai Ho and Yu-Yen Ou
  • [A5] Application of Multimodal Machine Learning Methods for Breast Cancer Detection, Dawn Chen and Ming-Jing Hwang
  • [A6] ASSA-PBN: A Toolbox for Probabilistic Boolean Networks, Andrzej Mizera, Jun Pang and Qixia Yuan
  • [A7] A simulation tool for generating DNA and methylation sequencing data, Chen-Yu Kang and Ren-Hua Chung
  • [A8] Dissecting genomic determinants of plant epigenomes with deep convolutional neural networ, Ngoc Tu Le and Tu Bao Ho
  • [A9] Missing value imputation for gene expression data with Deep Learning, Kazumasa Saito, Shigeto Seno, Hideo Matsuda and Yoichi Takenaka
  • [A10] CAFE MOCHA: An Integrated Platform for Discovering Clinically Relevant Molecular Changes in Cancer; an Example of Distant Metastasis and Recurrence-linked Classifiers in HNSCC, Neeraja Krishnan, Mohanraj I, Janani Hariharan and Binay Panda
  • [A11] Combining probabilistic alignments with read pair information improves accuracy of split-alignments, Naruki Yoshikawa, Anish Shrestha and Kiyoshi Asai
  • [A12] Combined Knowledge-Free and Data-Driven Strategy for Ab Initio Identification of Transcription Factor Binding Motifs, Takuya Sumi, Asuka Sugimoto, Jiyoung Kang and Masaru Tateno
  • [A13] Characterizing the 3-node and 4-node motifs in both cancer networks and signal transduction networks, Ka-Lok Ng, Chien-Hung Huang and Ci-Jun Peng
  • [A14] Novel algorithm for Multicomponent Decomposition of Multivariate Data Coupled with Simulated Annealing-Extended Sampling, Masaru Tateno, Jiyoung Kang and KazuhikoYamazaki
  • [A15] Novel algorithm for identification of operon-like gene clusters in eukaryotic whole genome DNA sequences, Kakeru Sakabe, Jiyoung Kang, Asuka Sugimoto and Masaru Tateno
  • [A16] Clarification of human gut microbial community using Latent Dirichlet Allocation, Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori and Michiaki Hamada
  • [A17] Fully automatic and intelligent adapter detection and trimming algorithms for single- and paired-end NGS reads, Chia-Hua Chang, Wen-Fu Hsieh and Jui-Hung Hung
  • [A18] Functional analysis of metagenome using composition- based method, Meya Cho, Shigeto Seno, Hideo Matsuda and Yoichi Takenaka
  • [A19] Detecting gene-gene interactions for mutivariate quantitative traits, Hyein Kim, Taesung Park and Mira Park
  • [A20] Development of Clustering method using Factor Analysis based on Gene Expression of Functional Sets, Naoaki Ono, Nicolas Savaro, Ming Huang, Md Altaf-Ul-Amin and Shigehiko Kanaya
  • [A21] A SOA-Based Library for Representation of the Biological Systems in Computer Algorithms, Sepehr Najjarpour and Mehrshad Khosraviani
  • [A22] Predicting Compound-Protein Interaction with Neural Networks based Pairwise Model, Mun-Hwan Lee, Eung-Hee Kim, Jinhyun Ahn, Jinuk Jung, Junho Park and Hong-Gee Kim
  • [A23] Learning mutation signatures of indels by Latent Dirichlet Allocation with Variational Bayes inference, Taro Matsutani, Yuki Ueno, Tsukasa Fukunaga, Michiaki Hamada
  • [A24] Multiple hybrid de novo genome assembly of an allotetraploid crop, finger millet, and homeolog phasing with one parental genome, Masaomi Hatakeyama, Sirisha Aluri, Mathi Thumilan Balachadran, Sajeevan Radha Sivarajan, Andrea Patrignani, Simon Grüter, Lucy Poveda, Rie Shimizu-Inatsugi, John Baeten, Kees-Jan Francoijs, Karaba N. Nataraja, Yellodu A. Nanja Reddy, Shamprasad Phadnis, Ramapura L. Ravikumar, Ralph Schlapbach, Sheshshayee M. Sreeman and Kentaro K. Shimizu
  • [A25] Accounting for Tumor Heterogeneity in Identification of Driver Patterns in Cancer Genomes, Weiqing Huang, Jie Hu and Lin Hou
  • [A26] Ant colony optimization algorithm for predicting RNA folding pathways, Seira Takitou and Akito Taneda
  • [B1] Chemosensitivity prediction using a combined gene expression profile in breast cancer, Ki-Yeol Kim
  • [B2] Incorporating genetic networks into case-control association studies with high-dimensional DNA methylation data, Kipoong Kim and Hokeun Sun
  • [B3] modPhEA: model organism Phenotype Enrichment Analysis of eukaryotic gene sets, Meng-Pin Weng and Ben-Yang Liao
  • [B4] SCAST:A cost effective diagnostic framework based on cancer associated significant transcript screening, Anju Pratap and Michiaki Hamada
  • [B5] Systematic Drug Repurpsing for Sepsis using public biomedical databases, Hyun Wook Han
  • [B6] Design a pipeline for analyzing the mRNA degradation patterns, Jungim Won, Jaemoon Shin, Jeehee Yoon and Donghoon Jeong
  • [B7] EXPath 2.0: an update version of database for identifying regulatory interactions in plant biological pathways, Guan-Zhen Li, Yu-Cheng Hung, Kuan-Chieh Tseng and Wen-Chi Chang
  • [B8] Analyzing cell type-specific gene regulatory networks using Immuno-Navigator, Alexis Vandenbon
  • [B9] Comparing ensembles of protein structures from molecular dynamics simulations in terms of residue-residue interaction, Chie Motono and Takatsugu Hirokawa
  • [B10] A Design of DrugBank to BioPAX Converter, Jinhyun Ahn, Eung-Hee Kim, Munhwan Lee, Jinuk Jung, Junho Park and Hong-Gee Kim
  • [B11] Plasma microRNA biomarker detection and evaluation for mild cognitive impairment using differential correlation analysis and logistic regression, Mitsunori Kayano, Sayuri Higaki and Shumpei Niida
  • [B12] In Search of Structural Homologs in the Twilight Zone, Tsun-Tsao Huang and Jen-Shiang Yu
  • [B13] PhenoToGeno Browser (PGB): an interactive genome browser to visualize and analyze disease- gene-variant relationships, Jae Moon Shin, Dawoon Jung and Jeehee Yoon
  • [B14] The systematic model of drug repositioning considering disease type and epigenetic features, Kyungsik Ha, Junho Park, Hyunwhan Joe, Hwajin Lee and Hong-Gee Kim
  • [B15] Genome-wide identification of graft-transmissible small RNAs using heterografts between Solanaceous species, Bo-Han Hou, Ruei-Yuan Su, Wen-Chi Lee, Shu-I Lin and Ho-Ming Chen
  • [B16] Biological Interaction Data Model Development for Heterogeneous Data Integration, Junho Park and Hong-Gee Kim
  • [B17] Development of User- Configurable NGS Pipeline System, Sung Min Yang, Yong Sun Shim, Hye Yeon Kim and Hong-Gee Kim
  • [B18] Identification of Adverse Drug Reactions and Medication Intakes on Twitter Using Various Combinations of Language Features, Chen-Kai Wang, Emily Chia-Yu Su and Hong-Jie Dai
  • [B19] CMV: Cancer Mutation Visulizer, a cross-cohort annotating and visualizing system for cancer analysis projects, Chi-Ching Lee and Po-Jung Huang
  • [B20] Virtual screening of novel serine racemase inhibitors in silico using the molecular docking method, Jia-Jun Liu, Ming-Hsun Tsai, Dong-Chuan Wu, Wei-Yong Lin, Chung-Y. Hsu and Chih-Hao Lu
  • [B21] Defective Electron Transport Chain Complex in Aneuploidy Cells - Exploring Mitochondrial Functions with RNA-seq Data Using the MitoXplorer web-platform, Annie Yim, Prasanna Koti, Milena Duerrbaum,Salma Gamal, Cecilia Garcia-Perez, Fabiana Perocchi, Zuzana Storchova and Bianca Habermann
  • [B22] The study of the sequence and structure similarity among metal ion binding sites in proteins, Ming-Hsun Tsai, Jia-Jun Liu and Chih-Hao Lu
  • [B23] Optimizing sequence assembly for evolutionary variant pattern analysis, Seokwoo Kang, Hongtaek Oh and Giltae Song
  • [B24] Interpretation of Branchpoint Variations in Next Generation Sequencing, Poulami Chaudhuri, Akriti Jain and Rajgopal Srinivasan
  • [B25] Unraveling the bromodomain and extra-terminal (BET)-mediated transcriptional networks in triple-negative breast cancer (TNBC), Men-Yee Chiew, Chi-Dung Yang, Yu-Jen Chang and Hsien-Da Huang
  • [B26] Development of a Multi-gene Sequencing Panel for Sudden Cardiac Death Screening Based on Preventive Medicine, Hsin-Tzu Huang, Wei-Chih Huang, Wei-Chi Wang, Yu-Feng Hu and Hsien-Da Huang
  • [B27] Integrated analysis of small RNA sequencing for human cancer research, Shu-Hsuan Liu and Wei-Chung Cheng
  • [B28] Improved member genome recovery from enrichment reactor microbial communities using long read metagenomics, Krithika Arumugam, Irina Bessarab, Xianghui Liu, Gayathri Natarajan, Cheryl Sze Yee Tsan, Stefan Wuertz, Federico Lauro, Ying Yu Law, Daniel Huson and Rohan Williams
  • [B29] Feature extraction using wavelet transformation to reveal genomic variant effect on binding affinity of EGFR, Mayumi Kamada and Mikito Toda
  • [B30] Fucosylation pathway genes are associated with patients survival late in early-stage non-small cell lung cancer, Jin-Muk Lim, Yong-Sun Shim, Jiwon Son and Hong-Gee Kim
  • [B31] Erythrocytes simulation including detailed oxidative stress pathway for study of premature infants, Ayaka Matsuo and Yasuhiro Naito
  • [B32] Links between Chromosomal Rearrangements and Chromatin Structure, Krister Swenson, Sylvain Pulicani, Pijus Simonaitis and Mathieu Blanchette
  • [B33] Cosearge: an exploratory approach reveals spatial gene co- localization beyond topologically associated domains, Yutaka Saito and Toutai Mituyama
  • [B34] Optimization of biomarker quantification in salivary metaboloics, Atsumi Tomita, Masayo Mori and Masahiro Sugimoto
  • [B35] Subcellular localization of lncRNAs is affected by Transposable Element (TE) derived sequences inside lncRNAs., Takafumi Chishima and Michiaki Hamada
  • [B36] Genome Analysis of Five Ralstonia solanacearum strains from the Philippines, Ma. Anita Bautista, Jo-Hannah Llames, Lucille Villegas and Emilia Andrea Sabban
  • [B37] Metagenomic Analysis of Stingless Bee Gut Microbiome, Alfredo Jose Ballesteros, Maria Dulce Mostoles, Ma. Carmina Manuel and Ma. Anita Bautista
  • [B38] Whole-genome sequencing analysis of Esophageal Squamous Cell Carcinoma with response to neo-adjuvant chemotherapy, Munmee Dutta, Masashi Fujita, Tadashi Yasuda, Raúl Nicolás Mateos, Ashwini Patil, Kenta Nakai and Hidewaki Nakagawa
  • [C1] Structural insights into the polypharmacological activity of dietary flavonols on serine/threonine kinases, Bincy Baby, Priya Antony, Walaa Al Halabi, Zahrah Al Homedi and Ranjit Vijayan
  • [C2] Classification of species by bi- clustering based on emitting volatile organic compounds, Mohammad Bozlul Karim, Naoaki Ono, Md.Altaf-Ul -Amin and Shigehiko Kanaya
  • [C3] Compuational analysis of the mode-of-action and pharmacological effects of Japanese Kampo medicines, Ryusuke Sawada, Michio Iwata, Masahiro Umezaki, Yoshihiko Usui, Takaki Kubono, Makoto Kadowaki and Yoshihiro Yamanishi
  • [C4] Generation of hypothetical reactions from a set of metabolites based on stoichiometry, Jun Ohta
  • [C5] Toward efficient protein-ligand docking for virtual screening by reuse of fragments, Rikuto Kubota, Keisuke Yanagisawa, Masahito Ohue and Yutaka Akiyama
  • [C6] Time depndent variance- covariance matrix and random matrix analysis of protein-ligand dynamical interaction, Masanori Yamanaka
  • [C7] Feature extraction by enumerating lasso solutions for predicting plasma protein binding of peptide, Takashi Tajimi, Naoki Wakui, Masahito Ohue and Yutaka Akiyama